species:   Fugra
pid:       PID0986
parent:    FgmilR-7dps-102
paralog:   
locus:     NC_026477.1:6032393-6032534
matures:   ['UUUGGCUGAUCGACUCUGUUGGA', 'AGACGGGGUUCGCUUCGCGCCGCCUU']
srr:       SRR6516243
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram NC_026477.1:6032393-6032534

4 out of bounds
4 alignments
4 proper strand
4 stranded perfect matches

    ***************************                                                                                  *************************    
AGAAACGAGACGGGGUUCGCUUCGCGCCGCCUUGCCUUUUGUUGUCUUCUCAACAUCUGUCAUUGCGUGGUCACAGAUUGAUCGCCCCUGUGCCCGCCUUUUGUCUUUUGCCUUUUGGCUGAUCGACUCUGUUGGAGUGUCU
(((.((..((((((((.((..(((.(((((..((.(...(((((......)))))...).))..))((((.(((((...........))))).))))...................)))))).))))))))))...)).)))
-----------------------------------------------------------------------------------------------------------------UUUGGCUGAUCGACUCUGUUGGA------ l=23 a=0 c
-------AGACGGGGUUCGCUUCGCGCCGCCUU------------------------------------------------------------------------------------------------------------- l=26 a=0 c*
-------------------------------------------------------------------------------------------------------------------UGGCUGAUCGACUCUGUUGGAGU---- l=23 a=2 ma
------GAGACGGGGUUCGCUUCGCGCCGCC--------------------------------------------------------------------------------------------------------------- l=25 a=0 ma*

-----------------------------------------------------------------------------------------------------------------------UGAUCGACUCUGUUGGAGUGU-- l=21 a=1 
-------------------------------------------------------------------------------------------------------------------UGGCUGAUCGACUCUGUUGGAGU---- l=23 a=2 (ma)
-------------------------------------------------------------------------------------------------------------------UGGCUGAUCGACUCUGUUGGAGUGU-- l=25 a=1 

mb-01011
ax-1001011
ku-01
ss-101111101100
fn-011
